Package: bamsignals
Type: Package
Title: Extract read count signals from bam files
Version: 1.12.1
Date: 2016-03-30
Authors@R: c( person(given="Alessandro",family="Mammana",
        email="mammana@molgen.mpg.de", role=c("aut", "cre")),
        person(given="Johannes",family="Helmuth",
        email="helmuth@molgen.mpg.de", role=c("aut")))
Author: Alessandro Mammana [aut, cre], Johannes Helmuth [aut]
Maintainer: Alessandro Mammana <mammana@molgen.mpg.de>
Description: This package allows to efficiently obtain count vectors
    from indexed bam files. It counts the number of reads in given
    genomic ranges and it computes reads profiles and coverage
    profiles. It also handles paired-end data.
License: GPL-2
Depends: R (>= 3.2.0)
Imports: methods, BiocGenerics, Rcpp (>= 0.10.6), IRanges,
        GenomicRanges, zlibbioc
Suggests: testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown
LinkingTo: Rcpp, Rhtslib (>= 1.12.1), zlibbioc
biocViews: DataImport, Sequencing, Coverage, Alignment
VignetteBuilder: knitr
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2018-06-02 00:25:09 UTC; biocbuild
Built: R 3.4.1; x86_64-pc-linux-gnu; 2018-10-17 22:42:49 UTC; unix
