Package: AneuFinder
Type: Package
Title: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Version: 1.22.0
Author: Aaron Taudt, Bjorn Bakker, David Porubsky
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: AneuFinder implements functions for copy-number detection,
    breakpoint detection, and karyotype and heterogeneity analysis in
    single-cell whole genome sequencing and strand-seq data.
Depends: R (>= 3.5), GenomicRanges, ggplot2, cowplot, AneuFinderData
Imports: methods, utils, grDevices, graphics, stats, foreach,
        doParallel, BiocGenerics (>= 0.31.6), S4Vectors, GenomeInfoDb,
        IRanges, Rsamtools, bamsignals, DNAcopy, ecp, Biostrings,
        GenomicAlignments, reshape2, ggdendro, ggrepel, ReorderCluster,
        mclust
Suggests: knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Mmusculus.UCSC.mm10
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2021-10-26 20:51:32 UTC; biocbuild
biocViews: ImmunoOncology, Software, Sequencing, SingleCell,
        CopyNumberVariation, GenomicVariation, HiddenMarkovModel,
        WholeGenome
URL: https://github.com/ataudt/aneufinder.git
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/AneuFinder
git_branch: RELEASE_3_14
git_last_commit: ea0beb3
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: yes
Built: R 4.1.3; x86_64-conda-linux-gnu; 2022-09-15 08:17:04 UTC; unix
