bin/gapc
include/librna/rnalib.h
include/rtlib/adp.hh
include/rtlib/adp_specialization/pareto_0_nosort_block.hh
include/rtlib/adp_specialization/pareto_0_nosort_step.hh
include/rtlib/adp_specialization/pareto_1_sorted_block.hh
include/rtlib/adp_specialization/pareto_1_sorted_step.hh
include/rtlib/adp_specialization/pareto_3_yukish_block.hh
include/rtlib/adp_specialization/pareto_3_yukish_step.hh
include/rtlib/adp_specialization/sort_block.hh
include/rtlib/algebra.hh
include/rtlib/asymptotics.hh
include/rtlib/backtrack.hh
include/rtlib/bench.hh
include/rtlib/bigint.hh
include/rtlib/bitops.hh
include/rtlib/cm_alph.hh
include/rtlib/cstr.h
include/rtlib/empty.hh
include/rtlib/erase.hh
include/rtlib/filter.hh
include/rtlib/float_accuracy_operators.hh
include/rtlib/generic_main.cc
include/rtlib/generic_opts.hh
include/rtlib/hash.hh
include/rtlib/hash_stats.hh
include/rtlib/hashlist.hh
include/rtlib/hashtng.hh
include/rtlib/list.hh
include/rtlib/map_pool.hh
include/rtlib/move.hh
include/rtlib/multipool.hh
include/rtlib/output.hh
include/rtlib/pareto_dom_sort.hh
include/rtlib/pareto_yukish.hh
include/rtlib/pareto_yukish_ref.hh
include/rtlib/pool.hh
include/rtlib/push_back.hh
include/rtlib/range.hh
include/rtlib/rational.hh
include/rtlib/ref.hh
include/rtlib/rna.hh
include/rtlib/rope.hh
include/rtlib/rules.hh
include/rtlib/sample.hh
include/rtlib/sequence.hh
include/rtlib/shape.hh
include/rtlib/shape_alph.hh
include/rtlib/singleton.hh
include/rtlib/string.cc
include/rtlib/string.hh
include/rtlib/subopt.hh
include/rtlib/subsequence.hh
include/rtlib/table.hh
include/rtlib/terminal.hh
include/rtlib/vector_sparse.hh
lib/librna.so
lib/librnafast.so
share/gapc/config_linux-gnu.mf
share/gapc/examples/adpf.gap
share/gapc/examples/adpf_filter.hh
share/gapc/examples/adpf_nonamb.gap
share/gapc/examples/affinelocsim2.gap
share/gapc/examples/elm.gap
share/gapc/examples/nonamb_answer.hh
share/gapc/examples/nussinov2.gap
share/gapc/examples/pf_filter.hh
share/gapc/librna/dna_mathews1999.par
share/gapc/librna/dna_mathews2004.par
share/gapc/librna/rna_andronescu2007.par
share/gapc/librna/rna_turner1999.par
share/gapc/librna/rna_turner2004.par
share/gapc/librna/rnalib.c
