# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Mar 15 16:41:59 2019
# ------------------------------------------------

package:
    name: bcbio-nextgen
    version: 1.1.4a
source:
    sha256: afe72f2299cd1e6528c42ac0e89e87f766720b5279c46ec74cbb7695f5f5327d
    url: https://github.com/bcbio/bcbio-nextgen/archive/e818102.tar.gz
build:
    number: '3'
    string: py37_3
requirements:
    host:
        - bzip2 1.0.6 h14c3975_1002
        - ca-certificates 2019.3.9 hecc5488_0
        - certifi 2019.3.9 py37_0
        - libffi 3.2.1 hf484d3e_1005
        - libgcc-ng 7.3.0 hdf63c60_0
        - libstdcxx-ng 7.3.0 hdf63c60_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1b h14c3975_1
        - pip 19.0.3 py37_0
        - python 3.7.1 h381d211_1003
        - readline 7.0 hf8c457e_1001
        - setuptools 40.8.0 py37_0
        - sqlite 3.26.0 h67949de_1001
        - tk 8.6.9 h84994c4_1000
        - wheel 0.33.1 py37_0
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h14c3975_1004
    run:
        - arrow
        - beautifulsoup4
        - bioblend
        - biopython
        - boto
        - cython
        - cyvcf2
        - dnapi
        - fadapa
        - geneimpacts
        - gffutils
        - h5py
        - htslib
        - ipyparallel >=6.0.2
        - ipython-cluster-helper >=0.6.1
        - joblib >=0.12
        - logbook
        - matplotlib
        - mock
        - msgpack-python
        - openssl >=1.1.1b,<1.1.2a
        - pandas
        - pip
        - psutil
        - py
        - pybedtools
        - pycrypto
        - pysam >=0.13.0
        - pytest
        - pytest-cov >=2.6.1
        - pytest-mock
        - python >=3.7,<3.8.0a0
        - python-dateutil >=2.5.0
        - pyvcf
        - pyyaml
        - requests
        - scipy
        - seaborn
        - seqcluster
        - statsmodels
        - tabulate
        - toolz
        - yamllint
test:
    commands:
        - LANG=C.UTF-8 bcbio_nextgen.py -h
        - LANG=C.UTF-8 bcbio_setup_genome.py -h
        - LANG=C.UTF-8 bcbio_prepare_samples.py -h
    imports:
        - bcbio.distributed.ipython
        - bcbio.distributed.multi
        - bcbio.pipeline.main
        - bcbio.provenance.do
about:
    home: https://github.com/chapmanb/bcbio-nextgen
    license: MIT
    summary: Validated, scalable, community developed variant calling, RNA-seq and
        small RNA analysis
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:bcbio-nextgen
