# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Nov 21 11:14:12 2018
# ------------------------------------------------

package:
    name: bcbio-nextgen
    version: 1.1.2a
source:
    sha256: cec1148e2f3411aaee84047fb4c83a545bc3863ae8f770be1e85844854b2ba39
    url: https://github.com/bcbio/bcbio-nextgen/archive/3a2e565.tar.gz
build:
    number: '1'
    string: py27_1
requirements:
    host:
        - ca-certificates 2018.10.15 ha4d7672_0
        - certifi 2018.10.15 py27_1000
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pip 18.1 py27_1000
        - python 2.7.15 h33da82c_5
        - readline 7.0 haf1bffa_1
        - setuptools 40.6.2 py27_0
        - sqlite 3.25.3 hb1c47c0_0
        - tk 8.6.9 ha92aebf_0
        - wheel 0.32.3 py27_0
        - zlib 1.2.11 h470a237_3
    run:
        - arrow
        - beautifulsoup4
        - bioblend
        - biopython
        - boto
        - cython
        - cyvcf2
        - dnapi
        - fabric
        - fadapa
        - geneimpacts
        - gffutils
        - h5py
        - htslib
        - ipyparallel >=6.0.2
        - ipython-cluster-helper >=0.6.1
        - joblib >=0.12
        - logbook
        - matplotlib
        - mock
        - msgpack-python
        - openssl >=1.0.2p,<1.0.3a
        - pandas
        - pip
        - progressbar
        - psutil
        - py
        - pybedtools
        - pycrypto
        - pysam >=0.13.0
        - pytest
        - pytest-cov >=2.5.1
        - pytest-mock
        - python >=2.7,<2.8.0a0
        - python-dateutil >=2.5.0
        - pyvcf
        - pyyaml
        - requests
        - scipy
        - seaborn
        - seqcluster
        - statsmodels
        - tabulate
        - toolz
        - yamllint
test:
    commands:
        - LANG=C.UTF-8 bcbio_nextgen.py -h
        - LANG=C.UTF-8 bcbio_setup_genome.py -h
        - LANG=C.UTF-8 bcbio_prepare_samples.py -h
    imports:
        - bcbio.distributed.ipython
        - bcbio.distributed.multi
        - bcbio.pipeline.main
        - bcbio.provenance.do
about:
    home: https://github.com/chapmanb/bcbio-nextgen
    license: MIT
    summary: Validated, scalable, community developed variant calling, RNA-seq and
        small RNA analysis
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:bcbio-nextgen
        - doi:10.1093/bioinformatics/btv061
