# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jul  2 08:04:10 2025
# ------------------------------------------------

package:
  name: atlas
  version: 2.0.0
source:
  sha256: f980a41e415654a862ea929411dbe4e89c2573a51911248ee2ba99f448b167aa
  url: https://bitbucket.org/wegmannlab/atlas/get/2.0.0-rc.11.tar.gz
build:
  number: '6'
  run_exports:
    - atlas >=2.0.0,<3.0a0
  string: hadca570_6
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_5
    - binutils_linux-64 2.43 h4852527_5
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.5 hb9d3cd8_0
    - ca-certificates 2025.6.15 hbd8a1cb_0
    - cmake 4.0.3 h74e3db0_0
    - gcc_impl_linux-64 13.3.0 h1e990d8_2
    - gcc_linux-64 13.3.0 h6f18a23_11
    - gxx_impl_linux-64 13.3.0 hae580e1_2
    - gxx_linux-64 13.3.0 hb14504d_11
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_5
    - libcurl 8.14.1 h332b0f4_0
    - libedit 3.1.20250104 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libexpat 2.7.0 h5888daf_0
    - libgcc 15.1.0 h767d61c_3
    - libgcc-devel_linux-64 13.3.0 hc03c837_102
    - libgcc-ng 15.1.0 h69a702a_3
    - libgomp 15.1.0 h767d61c_3
    - liblzma 5.8.1 hb9d3cd8_2
    - libnghttp2 1.64.0 h161d5f1_0
    - libsanitizer 13.3.0 he8ea267_2
    - libssh2 1.11.1 hcf80075_0
    - libstdcxx 15.1.0 h8f9b012_3
    - libstdcxx-devel_linux-64 13.3.0 hc03c837_102
    - libstdcxx-ng 15.1.0 h4852527_3
    - libuv 1.51.0 hb9d3cd8_0
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - ninja 1.13.0 h7aa8ee6_0
    - openssl 3.5.1 h7b32b05_0
    - rhash 1.4.6 hb9d3cd8_1
    - sysroot_linux-64 2.17 h0157908_18
    - tzdata 2025b h78e105d_0
    - zstd 1.5.7 hb8e6e7a_2
  host:
    - _openmp_mutex 4.5 3_kmp_llvm
    - armadillo 14.4.3 h4b2c6f2_0
    - arpack 3.9.1 nompi_hf03ea27_102
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.5 hb9d3cd8_0
    - ca-certificates 2025.6.15 hbd8a1cb_0
    - fmt 10.2.1 h00ab1b0_0
    - htslib 1.22 h566b1c6_0
    - icu 75.1 he02047a_0
    - jsoncpp 1.9.6 hf42df4d_1
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - lapack 3.6.1 ha44fe06_2
    - libblas 3.9.0 32_h59b9bed_openblas
    - libcblas 3.9.0 32_he106b2a_openblas
    - libcurl 8.14.1 h332b0f4_0
    - libdeflate 1.24 h86f0d12_0
    - libedit 3.1.20250104 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libgcc 15.1.0 h767d61c_3
    - libgcc-ng 15.1.0 h69a702a_3
    - libgfortran 15.1.0 h69a702a_3
    - libgfortran-ng 15.1.0 h69a702a_3
    - libgfortran5 15.1.0 hcea5267_3
    - libhwloc 2.11.2 default_h0d58e46_1001
    - libiconv 1.18 h4ce23a2_1
    - liblapack 3.9.0 32_h7ac8fdf_openblas
    - liblzma 5.8.1 hb9d3cd8_2
    - libnghttp2 1.64.0 h161d5f1_0
    - libopenblas 0.3.30 pthreads_h94d23a6_0
    - libssh2 1.11.1 hcf80075_0
    - libstdcxx 15.1.0 h8f9b012_3
    - libstdcxx-ng 15.1.0 h4852527_3
    - libxml2 2.13.8 h4bc477f_0
    - libzlib 1.3.1 hb9d3cd8_2
    - llvm-openmp 20.1.7 h024ca30_0
    - mkl 2023.2.0 h84fe81f_50496
    - ncurses 6.5 h2d0b736_3
    - nlohmann_json 3.12.0 h3f2d84a_0
    - openblas 0.3.30 pthreads_h6ec200e_0
    - openssl 3.5.1 h7b32b05_0
    - superlu 5.2.2 h00795ac_0
    - tbb 2021.13.0 hceb3a55_1
    - zlib 1.3.1 hb9d3cd8_2
    - zstd 1.5.7 hb8e6e7a_2
  run:
    - armadillo >=14.4,<15.0a0
    - fmt >=10.2.1,<11.0a0
    - htslib >=1.22,<1.23.0a0
    - jsoncpp >=1.9.6,<1.9.7.0a0
    - lapack
    - libgcc >=13
    - libstdcxx >=13
    - libzlib >=1.3.1,<2.0a0
    - mkl
    - nlohmann_json
    - openblas
test:
  commands:
    - atlas | grep "successfully"
    - atlas simulate
    - atlas HKY85 --bam ATLAS_simulations.bam --fasta ATLAS_simulations.fasta
    - atlas GLF --bam ATLAS_simulations.bam
    - atlas saf --glf ATLAS_simulations.glf.gz --fasta ATLAS_simulations.fasta
    - atlas majorMinor --glf ATLAS_simulations.glf.gz
    - rm ATLAS_* *.parameters saf.saf.* || exit 1
about:
  home: https://atlaswiki.netlify.app
  license: MPL-2.0
  summary: 'ATLAS: Analysis Tools for Ancient and Low-depth Samples'
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
