/*ARBDB ASCII*/
window	%% (%
	font		"8x13bold"
	foreground		"Black"
	background		"light grey"
	ARB_PHYL	%% (%
		horizontal_page_increment	%i 50
		vertical_page_increment	%i 50
		scroll_delay_vertical	%i 20
		scroll_delay_horizontal	%i 20
		scroll_width_horizontal	%i 9
		scroll_width_vertical	%i 20
		%) /*ARB_PHYL*/

	color_1		"black"
	color_2		"black"
	color_3		"black"
	reverse		"n"
	data_bg		"blue"
	data_fg		"yellow"
	data_rv		"r"
	windows	%% (%
		PHYL_MATRIX	%% (%
			width	%i 460
			height	%i 640
			posx	%i 10
			posy	%i 10
			%) /*PHYL_MATRIX*/

		ARB_PHYLO	%% (%
			width	%i 830
			height	%i 630
			posx	%i 0
			posy	%i 0
			%) /*ARB_PHYLO*/

		PHYL_FILTER	%% (%
			width	%i 600
			height	%i 300
			posx	%i 5
			posy	%i -16
			%) /*PHYL_FILTER*/

		WINDOW_PROPERTIES	%% (%
			width	%i 532
			height	%i 291
			posx	%i 395
			posy	%i 274
			%) /*WINDOW_PROPERTIES*/

		GC_MANAGER	%% (%
			width	%i 770
			height	%i 148
			posx	%i 395
			posy	%i 274
			%) /*GC_MANAGER*/

		DistanceTable	%% (%
			width	%i 600
			height	%i 220
			posx	%i 5
			posy	%i -16
			%) /*DistanceTable*/

		%) /*windows*/

	ARB_PHYLO	%% (%
		horizontal_page_increment	%i 50
		vertical_page_increment	%i 50
		scroll_delay_vertical	%i 20
		scroll_delay_horizontal	%i 20
		scroll_width_horizontal	%i 70
		scroll_width_vertical	%i 26
		%) /*ARB_PHYLO*/

	%) /*window*/

phyl	%% (%
	which_species		"marked"
	alignment		"ali_23all"
	filter	%% (%
		alignment		"none"
		name		"none"
		filter		""
		cancel		".0-"
		startcol	%i 0
		stopcol	%i 3413
		minhom	%i 0
		maxhom	%i 100
		point	%i 0
		minus	%i 0
		rest	%i 0
		lower	%i 0
		%) /*filter*/

	weights	%% (%
		name		"none"
		alignment		"none"
		%) /*weights*/

	rates	%% (%
		name		"none"
		%) /*rates*/

	cancel	%% (%
		chars		"-."
		%) /*cancel*/

	correction	%% (%
		name		"none/J/C"
		correction		"none"
		transformation		"J+C"
		trans	%i 2
		%) /*correction*/

	tree	%% (%
		tree_name		"tree_gud"
		%) /*tree*/

	alpha	%f 1.000000
	ratematrix	%% (%
		val_2_1	%f 1.000000
		val_4_1	%f 1.000000
		val_4_2	%f 1.000000
		val_8_1	%f 1.000000
		val_8_2	%f 1.000000
		val_8_4	%f 1.000000
		val_16_1	%f 1.000000
		val_16_2	%f 1.000000
		val_16_4	%f 1.000000
		val_16_8	%f 1.000000
		%) /*ratematrix*/

	matrix	%% (%
		point	%i 0
		minus	%i 0
		rest	%i 0
		lower	%i 0
		%) /*matrix*/

	%) /*phyl*/

bc	%% (%
	env	%% (%
		seq_len	%i 0
		filter_len	%i 0
		ali_len	%i 0
		marked_len	%i 0
		%) /*env*/

	alignment		""
	species		""
	filter	%% (%
		name		""
		filter		""
		alignment		""
		%) /*filter*/

	table	%% (%
		type	%i 1
		rank	%% (%
			AD	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*AD*/

			CY	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*CY*/

			GU	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*GU*/

			UR	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*UR*/

			UNSPEC	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*UNSPEC*/

			BLANK	%% (%
				aden	%f 0.000000
				cyto	%f 0.000000
				guan	%f 0.000000
				urac	%f 0.000000
				unspec	%f 0.000000
				blank	%f 0.000000
				%) /*BLANK*/

			%) /*rank*/

		bond	%i 1
		%) /*table*/

	check	%% (%
		pos1	%i 1
		pos2	%i 1
		measure	%i 2
		result		""
		%) /*check*/

	plot	%% (%
		table	%i 1
		type	%i 1
		range	%i 3
		%) /*plot*/

	save	%% (%
		file_name		""
		directory		"."
		filter		"bc"
		%) /*save*/

	load	%% (%
		file_name		""
		directory		"."
		filter		"bc"
		%) /*load*/

	pca	%% (%
		project	%% (%
			file_name		""
			directory		""
			%) /*project*/

		option	%i 0
		value	%f 0.000000
		nfactors	%i 0
		ztrafo	%i 0
		rotation	%i 0
		noise	%% (%
			abs	%f 0.000000
			rel	%f 0.000000
			data	%i 0
			factors	%i 0
			distance	%i 0
			%) /*noise*/

		%) /*pca*/

	standard	%i 0
	overview	%% (%
		data		"BC: no information available.\n    Please select START first.\n"
		comp		"BC: no information available.\n    Please select START first.\n"
		cov		"BC: no information available.\n    Please select START first.\n"
		cov_thresh	%f 0.700000
		trans		"BC: no information available.\n    Please select START first.\n"
		transmatrix		"BC: no information available.\n    Please select START first.\n"
		trans_thresh	%f 0.200000
		verbose		"BC: no information available.\n    Please select START first.\n"
		rounding		"BC: no information available.\n    Please select START first.\n"
		%) /*overview*/

	%) /*bc*/


