{
    "samples_txt": "samples.txt",
    "idba_ud": {
        "--min_contig": 1000,
        "threads": 11,
        "run": true
    },
    "kraken_txt": "kraken.txt",
    "output_dirs": {
        "FASTA_DIR": "02_FASTA_idba_ud",
        "CONTIGS_DIR": "03_CONTIGS_idba_ud",
        "QC_DIR": "01_QC_idba_ud",
        "MAPPING_DIR": "04_MAPPING_idba_ud",
        "PROFILE_DIR": "05_ANVIO_PROFILE_idba_ud",
        "MERGE_DIR": "06_MERGED_idba_ud",
        "LOGS_DIR": "00_LOGS_idba_ud"
    }
}
