#!/opt/anaconda1anaconda2anaconda3/bin/python
# -*- coding: utf-8

import sys
import argparse

import anvio.db as db
import anvio.dbops as dbops
import anvio.terminal as terminal 

from anvio.errors import ConfigError


run = terminal.Run()
progress = terminal.Progress()


def update_profile_db_from_v5_to_v6(profile_db_path):
    if profile_db_path is None:
        raise ConfigError("No profile database is given.")

    # make sure someone is not being funny
    dbops.is_profile_db(profile_db_path)

    # make sure the version is 5
    profile_db = db.DB(profile_db_path, None, ignore_version = True)
    if str(profile_db.get_version()) != '5':
        raise ConfigError("Version of this profile database is not 5 (hence, this script cannot really do anything).")

    is_merged = profile_db.get_meta_value('merged')

    progress.new("Trying to upgrade the %s profile database" % 'merged' if is_merged else 'single')
    progress.update('...')

    # if it is a single database, we need to rename two tables
    if not is_merged:
        profile_db._exec('ALTER TABLE metadata_contigs RENAME TO atomic_data_contigs;')
        profile_db._exec('ALTER TABLE metadata_splits RENAME TO atomic_data_splits;')

        profile_db._exec('DELETE FROM views;')
        profile_db._exec('''INSERT INTO views VALUES ("single","atomic_data_splits")''')

    # fix the hash entry in the metadata table
    db_hash = profile_db.get_meta_value('annotation_hash')
    profile_db.remove_meta_key_value_pair('annotation_hash')
    profile_db.set_meta_value('contigs_db_hash', db_hash)

    # set the version
    profile_db.remove_meta_key_value_pair('version')
    profile_db.set_version('6')

    # bye
    profile_db.disconnect()
    progress.end()

    run.info_single("Database successfully upgraded.")


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='A simple script to upgrade profile database to from version 5 version 6')
    parser.add_argument('profile_db', metavar = 'PROFILE_DB', help = 'Profile database (of version 5)')
    args = parser.parse_args()

    try:
        update_profile_db_from_v5_to_v6(args.profile_db)
    except ConfigError as e:
        print(e)
        sys.exit(-1)
