>NZ_AAPG01000024.1|c1|7483-8112|-|ZP_01216269.1|hypothetical_protein
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MPTTD
QTCLTDIVA---TLQTHQHFKIFKPYGFLSQFVPEKRKKKSLLGELFNF-PE----NIMA
I---GRLDHDSEGLLLLTTDGMMSYKI--RSKGIEKEYYVQVDGEIT----AQAM-SLLQ
KGVEIAINGATYLTLPCKAFKLDVEPKLPTRGRKIRDPRHGPTSWVSITLCEGKNRQIRK
MTAAVGFATLRLVRVRIGDIHID-SMIAGDVVTLTNFD----------------------
----------------------DALDR---------------------------------
--------------------
>NZ_ADBX01000009.1|c1|156209-156970|+|ZP_06192969.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MLTQSSIRLNKYISDSGICSRRHADRHIKLGNVFINDRLAA-VGAQVFSGDR
-VRVNDRQIAPRDADDLVLIALNKPVGVLTS---MGKHERDNIGDFVNH-SQ----RTFP
I---GRLDKASQGLIFLTNQGELVNKILRAGNNHEKEYLVTVNKPLT----DAFI-QGMG
AGVPI--LGK--VTHPCLV---------EKEAS----------QVFRITLVQGLNRQIRR
MCKYFGYEVTKLERVRIMNVDLT-GLALGEWRDFTADERL--------------------
-----------ELFKLIEHSSSEEPCLAAQERRS--------------------------
--------------------
>NZ_DS265234.1|c1|32701-33723|-|ZP_04961425.1|pseudouridine_synthase_family_1_protein
------------------------------------------------------------
--------------------------------------------------------MCTI
RCETLGDCMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSRETNKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSTSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_DS179725.1|c1|32650-33672|-|ZP_04919389.1|pseudouridine_synthase_family_1_protein
------------------------------------------------------------
--------------------------------------------------------MCTI
RCETLGDCMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTDQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSRETNKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_AAUR01000021.1|c1|32013-33035|-|ZP_01948993.1|pseudouridine_synthase_family_1_protein
------------------------------------------------------------
--------------------------------------------------------MCTI
RCETLGDCMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSDTEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_ACHY01000015.1|c1|198702-199688|+|ZP_04403329.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTDQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_ACHV01000001.1|c1|881359-882345|+|ZP_04413624.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTDQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
TSGSKPTPRTGGTLSLRKSK
>NZ_ACHW01000025.1|c1|363632-364618|+|ZP_04411588.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSDAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_DS265368.1|c1|45383-46405|+|ZP_04916712.1|pseudouridine_synthase_family_1_protein
------------------------------------------------------------
--------------------------------------------------------MCTI
RCETLGDYMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_AAKJ02000007.1|c1|46438-47460|+|ZP_01679807.1|pseudouridine_synthase_family_1_protein
------------------------------------------------------------
--------------------------------------------------------MCTI
RCETLGDCMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_ACFQ01000010.1|c1|215821-216807|-|ZP_04418162.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPE-VGSKVTEQDE
-VCIDGKPL--RSKERPIYIALNKPTGITCT---TERDVPGNIVDFIGH-HK----RIFP
I---GRLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPIT----PEFI-RQMS
SGVNI--LDT--VTLPCKV---------TQETQ----------YSFRIVLTQGLNRQIRR
MCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILAMCEDSSGTEEASRVAQ
SGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAPNSKKAQRRPSSPSSNT
ASGSKPTPRTGGTLSLRKSK
>NZ_ACMX01000094.1|c1|15773-16480|-|ZP_04154184.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISESGKASRRGADKLINERRVIINGKVAK-IGDQVQPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
V---GRLDKDSDGLILLTNDGDIINEILRAENKHEKEYIVSVDKPIT----PEFL-KEMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIQLN-NLPVGQWRDLTKKEKK--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACMP01000067.1|c1|31124-31807|+|ZP_04197402.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERKVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PEFL-EKMA
AGVKI--LDT--KTLPCEI---------TQLSK----------YEFEIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKN--------------------
-----------AYF--------QT------------------------------------
--------------------
>NC_010184.1|c3|2256569-2257276|+|YP_001645040.1|RNA-binding_S4_domain-containing_protein
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERKVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PEFL-EKMA
AGVKI--LDT--KTLPCEV---------TQLSK----------YEFEIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKK--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMD01000083.1|c1|29030-29746|+|ZP_04262048.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERKVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PEFL-EKMA
AGVKI--LDT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKK--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMU01000047.1|c1|32414-33121|+|ZP_04168818.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERKVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PEFL-EKMA
AGVKI--LDT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKK--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMS01000105.1|c1|32303-33019|+|ZP_04180391.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RINH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PEFL-EKMA
AGVKI--LDT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NC_011725.1|c3|2255220-2255927|+|YP_002367069.1|RNA_pseudouridine_synthase_family_protein
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
TGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACLV01000044.1|c1|174296-175003|+|ZP_04306090.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACMH01000054.1|c1|44204-44911|+|ZP_04239390.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NC_011772.1|c4|2213103-2213810|+|YP_002445746.1|RNA_pseudouridine_synthase_family_protein
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACNI01000047.1|c1|71188-71904|+|ZP_04084416.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACNB01000078.1|c1|43217-43933|+|ZP_04126448.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKSIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACNC01000080.1|c1|52383-53099|+|ZP_04120355.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACMA01000044.1|c1|44144-44860|+|ZP_04278800.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACNF01000058.1|c1|100294-101010|+|ZP_04102108.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACNK01000049.1|c1|90811-91527|+|ZP_04071980.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ABDL02000001.1|c1|491452-492159|-|ZP_03234425.1|RNA_pseudouridine_synthase_family_protein
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQEW----------------------------
--------------------
>NC_012581.1|c1|2014465-2015172|-|YP_002814813.1|RNA_pseudouridine_synthase_family_protein
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NC_011969.1|c2|2279703-2280419|+|YP_002530030.1|pseudouridylate_synthase_(pseudouridine
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQEW----------------------------
--------------------
>NZ_ACLZ01000032.1|c1|119734-120450|+|ZP_04284063.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
TGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NC_008600.1|c2|2279901-2280617|+|YP_894937.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NC_003909.8|c1|2308043-2308759|+|NP_978726.1|RNA_pseudouridylate_synthase_family_protein
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKXINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_AAEK01000006.1|c1|32181-32897|-|ZP_00236781.1|pseudouridine_synthase_family_1_protein_VC2223
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKSVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFKIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLTKKEKR--------------------
-----------RLF--------ADLNYEPQDW----------------------------
--------------------
>NZ_ACLY01000042.1|c1|56467-57183|+|ZP_04289317.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFNIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMR01000095.1|c1|35505-36251|+|ZP_04186150.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-MSLKFCLEKDVPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEI---------TQLSK----------YEFNIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMG01000040.1|c1|21350-22066|+|ZP_04245249.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MPNLRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>NZ_ACMJ01000040.1|c1|34343-35050|+|ZP_04227832.1|Pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRINKFISEAGKASRRGADKLINERRVIINGKVAK-IGDQVNPGDD
-VRVNGEQL--RIARDHVYIALNKPVGITCT---SEKAVKGNIIDLVNH-PL----RISH
I---GRLDKDSDGLILLTNDGDIVNEILRAENKHEKEYIVSVDKPIT----PDFL-EKMA
AGVKI--LGT--KTLPCEV---------TQLSK----------YEFQIILTQGLNRQIRR
MCEALGYQVYTLKRTRIMNIELN-NLPVGQWRDLSKKEKR--------------------
-----------RLF--------SDLNYEPQDW----------------------------
--------------------
>EF210776.1|c1|1-454|+|ABP57738.1|16S_rRNA_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------ITTSGELANRMMHPSFEVEREYSVRVLGELT----PEIM-KQMV
AGVEL--EDG--EARFDRVFQKGGP---EEAAN----------QWFNVVIKEGRNREVRR
MFEHFGLTVSRLIRVRFGNIGLPPRLKRGQFYELNSAEVA--------------------
-----------AVMKWSNLTVTGGKKAAPVKKASAKAHR---------------------
--------------------
>NZ_GG670300.1|c2|1965441-1966163|+|ZP_05656213.1|pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-----------MKMERLQKVIAHAGITSRRKAEGLITEGRVRVNGQVIKELGVQVSSKDV
-VEVDGVPI---EQEQHVYYLFYKPRGVISAV--TDDKKRKVVLDYFAEVPE----RVYP
V---GRLDYDTSGLLLLTNDGELSQTLMHPKHEVDKVYVAKVKGIAD----KKQL-LPLT
KGIRI--EGR--KTAPARF---------EILST----DQTTQSSIVQLTIHEGRNHQVKN
MLKAVGLPVQKLKRENYGPLDLK-GLRPGEYRELTKKEVS--------------------
-----------QLK--------NSAK----------------------------------
--------------------
>NZ_GG670287.1|c1|46337-47053|+|ZP_05649200.1|pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-------------MERLQKVIAHAGITSRRKAEELIVAGRVSVNGQIVKELGVQVSAKDR
-VEVDGVPI---EQESPVYYMLYKPRGVISAV--TDDKKRKVVLDFFTEVPE----RLYP
I---GRLDYDTSGLLLLTNDGDLSQKLMHPKHEVDKVYVAKVKGIAD----KKQL-LPLS
RGIRI--EGK--KTAPARF---------EILST----DAATQTSIVQLTIHEGRNHQVKN
MLKAVGLPVQKLKREMYGSLTLA-GLRPGEYRELTKKEVN--------------------
-----------ELK--------KQVK----------------------------------
--------------------
>NC_009480.1|c5|2234252-2235112|-|YP_001222719.1|putative_pseudouridine_synthase
------------------------------------------------------------
-------------------------------------------------------MTPSS
DRPHAWNPDEPVQGVRLQKVMAAAGVASRRVCEDMIAAGRVTVNGEVVTEPGRRIDPDVD
EVAVDDQAV--QLDTSKRYLMLNKPVGIYSSL--RDERGRPDLREFTEEFEE----RLFN
V---GRLDAETSGLLILTNDGDLAHVLAHPSFGVLKTYIAKVTGRVT----PQTI-QRLT
QGVDL--EDG--PIQADRA---------RILSG------GGDQTLVEITLHSGRNRIVRR
MLDEVGHPVEELVRRQFGPLHLG-SLGVGRVRDLTSDELG--------------------
-----------QLL---TISREARAQAGPATPQGAGAAAEAQGDVDREDGE---------
--------------------
>NC_007333.1|c2|1407441-1408568|+|YP_289267.1|pseudouridine_synthase,_Rsu
MNKPHDDSIRRRGGGRPRGGRGHFEQTGRREHRDRRGAHFDQDTGDDRRTAPGRKQRDGQ
RGERTQRAQAERRQRHAHDPRARRSGRGGRGAERGLSPQARARLRILRDEYDPWDDDPVD
PDEERDTYVDVPGGIRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKS
EIRVDGMRV--VTSQNLRYYALNKPRGVVSTM--FDPEGRPTIGDYAAQ-IGPIEERLFH
V---GRLDTDTEGLILLTNDGELANRLTHPRYKVTKTYLAKVPGPVP----RDVI-RQIR
KGVEL--DDG--FVKVDSFRVID-----NIEPK----------ALVEIRLHEGRKHIVRR
LMKAVGHPVSDLARTQIGPVGLN-NLKSGTIRALTSQEVS--------------------
-----------ELY--------TAAGM---------------------------------
--------------------
>NZ_AAGP01000013.1|c1|32421-33137|+|ZP_05913582.1|pseudouridine_synthase,_Rsu
------------------------------------------------------------
------------------------------------------------------------
--------------MRLQKILAEAGLGSRRACEQLILDGRVEVDGSIVTELGTRIDTETQ
AVYVDAVRI--STQTQKVYLVLNKPAGVVSTM--SDPDGRPCLADYVKN-RVD---RLFH
V---GRLDTETEGLILLTNDGELSNRLAHPRYEIPKTYLAQVRGQLA----KDVG-SRLK
AGMDL--DDG--FVKVDSFKLVD-----STPGK----------SVVELTLHSGRNRIVRR
LLKEVGHPVERLVRTKFGPITLD-EQRQGKIRPLRSDEIG--------------------
-----------ELF--------EAVGL---------------------------------
--------------------
>NZ_ACEV01000052.1|c2|189303-190055|-|ZP_05480897.1|pseudouridylate_synthase_ribosomal_large
------------------------------------------------------------
------------------------------------------------------------
-----MTSEQHPDGIRLQKVLSQAGVASRRAAEDLIAAGRVEVDGEVVTELGRRVHPDEA
VIHVDGTRV--NLRDDLVYLAFNKPKGVHSTM--SDDRGRPCVGDYLRG-RWEETPGVVH
V---GRLDENTEGLLLLTNDGDLGHRLMHPSYRVLKTYFAEVEGLVP----RGLG-KELR
AGWEL--PDG--IVKVDQFRVKD-----MHSGR----------SMIELVIHEGRKHIVRR
LMAATGHPVRKLVRTAVGDVQLG-NQRQGTIRRLNRGEVG--------------------
-----------ALY--------RTVGL---------------------------------
--------------------
>NC_006361.1|c7|2188204-2188917|+|YP_118221.1|putative_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-------------------MLAKAGVASRRAAEEMIDQGRVEVDGVIVREQGLRIDPQTA
VVRVDGVRV--VVRDEQVYVALNKPKGWQSTM--SDDLGRPCVGDIVAE-RIAAGQRLFH
V---GRLDADTEGLLLLTNDGDLAHRLMHPSFEVSKTYLATVHGEVH----HKVIGKRLR
DGIEL--EDG--PAKVDRFQVLE-----LGEGR----------SLVKIVLHEGRKHIVRR
LLDAVGHPVTRLVRTHIGPVALG-DQRPGTLRVLGRDEIG--------------------
-----------KLY--------EAVSL---------------------------------
--------------------
>NC_008596.1|c7|3804869-3805612|-|YP_888039.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MAEEQGVRLQKVLSQAGIASRRVAERMIIDGRVEVDGQIVTELGTRVDPAVA
DIRVDGSRI--ILDDTMVYLAINKPRGMHSTM--SDDRGRPCVGDLVEH-RVRGNKKLFH
V---GRLDADTEGLLLLTNDGELAHRLMHPSFEVPKTYVATVMGTVP----RGLG-KKLK
AGVEL--DDG--PAHVDDFAVVD-----TVPGK----------TMVKVTLHEGRNRIVRR
LLAAVDFPVQELVRTEIGSVSLG-DQRPGSIRALTRKEVG--------------------
-----------ELY--------QAVGL---------------------------------
--------------------
>NC_010612.1|c15|3079700-3080461|+|YP_001850832.1|pseudouridylate_synthase
------------------------------------------------------------
------------------------------------------------------------
--MTDTEDFEQERGIRLQKVLSQAGIASRRAAEKLIIDGRVEVDGQVVTELGTRVDPDTS
LIRVDGVRV--ILDDSLVYLALNKPRGMHSTM--SDDRGRPCIGDLIER-KVRGNKNLFH
V---GRLDADTEGLILLTNDGELAHRLMHPSHEVPKTYLATVAGTVP----RGLG-KKLR
AGIEL--EDG--PVRVDGFAVVD-----AIPGK----------TLVRVTLHEGRNRIVRR
MLAAVGFPVQALVRIDIGGVSLG-EQRPGSVRALRRDEIG--------------------
-----------QLY--------KAVGL---------------------------------
--------------------
>NZ_ACFI01000104.1|c1|7751-8494|-|ZP_05217033.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
--------MVEAQGIRLQKVLSQAGIASRRAAEKLIVDGRVEVDGQVVTELGTRVDPDAA
VIRVDGARV--VLDESQVYLALNKPRGVHSTM--SDDRGRPCIGDLIER-RVRGNKNLFH
V---GRLDAETEGLILLTNDGELAHRLMHPSHEVPKTYLATVTGSIP----RGLG-KTLR
AGIEL--DDG--MARVDEFAVVD-----ATPGK----------TLVRVTLHEGRNRIVRR
LLAAAGFPVESLVRTDIGPISLG-KQRPGSIRALGRDEVG--------------------
-----------RLY--------QAVGL---------------------------------
--------------------
>NC_002944.2|c5|1525811-1526554|+|NP_960347.1|hypothetical_protein
------------------------------------------------------------
------------------------------------------------------------
--------MVEAQGIRLQKVLSQAGIASRRAAEKLIVDGRVEVDGQVVTELGTRVDPDAA
VIRVDGARV--VLDESQVYLALNKPRGVHSTM--SDDRGRPCIGDLIER-RVRGNKNLFH
V---GRLDAETEGLILLTNDGELAHRLMHPSHEVPKTYLATVTGSIP----RGLG-KTLR
AGIEL--DDG--MARVDEFAVVD-----PIPGK----------TLVRVTLHEGRNRIVRR
LLAAAGFPVESLVRTDIGPISLG-KQRPGSIRALGRDEVG--------------------
-----------RLY--------QAVGL---------------------------------
--------------------
>NC_008595.1|c7|3130718-3131464|-|YP_882249.1|ribosomal_large_subunit_pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
-------MMVEAQGIRLQKVLSQAGIASRRAAEKLIVDGRVEVDGQVVTELGTRVDPDAA
VIRVDGARV--VLDESQVYLALNKPRGVHSTM--SDDRGRPCIGDLIER-RVRGNKNLFH
V---GRLDAETEGLILLTNDGELAHRLMHPSHEVPKTYLATVTGSIP----RGLG-KTLR
AGIEL--DDG--MARVDEFAVVD-----AIPGK----------TLVRVTLHEGRNRIVRR
LLAAAGFPVESLVRTDIGPISLG-KQRPGSIRALGRDEVG--------------------
-----------RLY--------QAVGL---------------------------------
--------------------
>NC_013169.1|c3|1559583-1560437|-|YP_003149304.1|pseudouridine_synthase_family_protein
------MTRRDNGPGRPNG-----------------------------------------
---------QGK------------RGTGGFGPVRKRRSR------------------PG-
-GNRPDHDVHTSQGERLQKVLAAAGLGSRRACEQMIADGRVEVDGVPVTELGVRIDPSRQ
KVAVDGLPV--QLDDSKVYLVFNKPVGVISTM--EDEEGRLSVGDYTYT-RKE---RLFH
V---GRLDQDTSGLLLLTNDGELAHRLQHPSYSVPKTYVAKVPGPVK----KGLG-NLLR
EGVEL--EDG--VVKVDDFSVVA-----SQPGW----------AMVQLVIHEGRKHVVRR
LLEEVGYPVEELVRTQVGEIRMG-DLRPGNLRAVTPDELA--------------------
-----------RTM--------KLVGL---------------------------------
--------------------
>NC_009664.2|c2|3882390-3883358|+|YP_001362848.1|pseudouridine_synthase
MSPNAPRSSGGRGQGRPQR-----------------------------------------
---------SGRPQPGGGKAQGGPRGAGGKAAPGARRGSAKRMTNDVKPAPQPPRRGPGP
IKAHPGTDVHDPEGVRLQKVLAQAGAGSRRACEEMIAAGRVTVDGEVVTELGVRIDPTRQ
VVHVDGMRF--SIDDELVYIMVNKPKGVVSTM--YDEEGRLNLADMVGP-REE---RLFH
V---GRLDLETEGLILLTNDGALTHRLQHPSFGVQKTYLAEVRGPVK----RDLG-RNLR
AGIEL--DDG--PVSVDSFKLVD-----SKPGY----------ALVEVVLHEGRKHIVRR
MLEAEGYPVLKLVRVQMGPIVLG-DLKPGKNRRLTRGEVQ--------------------
-----------QLM--------AVAGL---------------------------------
--------------------
>NC_013406.1|c4|5182205-5182966|-|YP_003244610.1|pseudouridine_synthase
------------------------------------------------------------
------------------------------------------------------------
------MSGKGRTTQRLDKVLSNLGFGSRAELKKKAKQGSIVVNGTVTKDPGKHVDPYAD
IIEFEGETI---QYREYVYLMLHKPPGVVSA---TEDLRDRTVLDLLDA-EY----RVFE
PFPVGRLDKDTEGLLLLTNDGKLAHELLSPRKHIPKTYEATVEGRVD----EEDV-RRFA
AGVTL--DDG-YVTLPGELAIHSHEEREDGVQL----------SRISLTIHEGKFHQVKR
MFEAVGKKVVYLKRISMGELRLDENLEIGTYRELTEQE-L--------------------
-----------ALI--------GRAGSE--------------------------------
--------------------
>NC_007912.1|c5|4701025-4701774|+|YP_529181.1|pseudouridine_synthase,_Rsu
------------------------------------------------------------
------------------------------------------------------------
---------MTSKHARLDRFISLNSNLNRRDVRLAIAQKRILVNGKHASTIHQVVSQFCH
-ITFDNQTL---QANAPVYIMLNKPAGRVSA---TKDSTHPTVVGCLPQ-QLQA--NIHI
V---GRLDFNSTGLMLLTNNGAWSRHLTSPENKVNKIYEVELERTINDDEWPQYI-SAFA
SGMYFAFEDL--TTQPAKL---------ERLTA----------TRARVTLVEGRYHQIKR
MFGRFRNKVIALHRTQLGALPLDPALQPGEHRLLNDDEII--------------------
-----------KL---------SNATFTNADLK---------------------------
--------------------
>NC_008463.1|c7|4855970-4856662|+|YP_792554.1|putative_pseudouridylate_synthase
------------------------------------------------------------
------------------------------------------------------------
--------------MRLDRFLANLPELSRRDAQMLIAGGRLRVDGQVVRDGTHEVRVFSR
-VELDEQLL--QAGKPARYYMLHKPMGCVSA---TRDPQHPTVLDLLPEDQR----DDLH
I--GGRLDYNTTGLMLLTNDGQWSRRLTLPGSRRDKVYYVETEAPID----QRYV-DAFA
AGLHFRFEDL--ITLPAQL---------EPIGP----------RCARLTLHEGRYHQVKR
MFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEIC--------------------
-----------SV-----------------------------------------------
--------------------
