MANIFEST.in
alignlib_lite.pyx
setup.cfg
setup.py
alignlib_lite.egg-info/PKG-INFO
alignlib_lite.egg-info/SOURCES.txt
alignlib_lite.egg-info/dependency_links.txt
alignlib_lite.egg-info/not-zip-safe
alignlib_lite.egg-info/top_level.txt
alignlib_src/Alignandum.cpp
alignlib_src/Alignandum.h
alignlib_src/Alignator.cpp
alignlib_src/Alignator.h
alignlib_src/Alignatum.cpp
alignlib_src/Alignatum.h
alignlib_src/AlignlibBase.cpp
alignlib_src/AlignlibBase.h
alignlib_src/AlignlibDebug.cpp
alignlib_src/AlignlibDebug.h
alignlib_src/AlignlibDefault.cpp
alignlib_src/AlignlibException.cpp
alignlib_src/AlignlibException.h
alignlib_src/AlignlibIndex.cpp
alignlib_src/AlignlibIndex.h
alignlib_src/AlignlibMethods.h
alignlib_src/Alignment.cpp
alignlib_src/Alignment.h
alignlib_src/AlignmentFormat.cpp
alignlib_src/AlignmentFormat.h
alignlib_src/AlignmentIterator.h
alignlib_src/DistanceMatrix.cpp
alignlib_src/DistanceMatrix.h
alignlib_src/Distor.cpp
alignlib_src/Distor.h
alignlib_src/Encoder.cpp
alignlib_src/Encoder.h
alignlib_src/Fragmentor.cpp
alignlib_src/Fragmentor.h
alignlib_src/HelpersAlignandum.cpp
alignlib_src/HelpersAlignandum.h
alignlib_src/HelpersAlignator.cpp
alignlib_src/HelpersAlignator.h
alignlib_src/HelpersAlignatum.cpp
alignlib_src/HelpersAlignatum.h
alignlib_src/HelpersAlignment.cpp
alignlib_src/HelpersAlignment.h
alignlib_src/HelpersDistanceMatrix.cpp
alignlib_src/HelpersDistanceMatrix.h
alignlib_src/HelpersDistor.cpp
alignlib_src/HelpersDistor.h
alignlib_src/HelpersEncoder.cpp
alignlib_src/HelpersEncoder.h
alignlib_src/HelpersFragmentor.cpp
alignlib_src/HelpersFragmentor.h
alignlib_src/HelpersIterator2D.cpp
alignlib_src/HelpersIterator2D.h
alignlib_src/HelpersLogOddor.cpp
alignlib_src/HelpersLogOddor.h
alignlib_src/HelpersMultAlignment.cpp
alignlib_src/HelpersMultAlignment.h
alignlib_src/HelpersMultipleAlignator.cpp
alignlib_src/HelpersMultipleAlignator.h
alignlib_src/HelpersMultipleAlignment.cpp
alignlib_src/HelpersMultipleAlignment.h
alignlib_src/HelpersPalette.cpp
alignlib_src/HelpersPalette.h
alignlib_src/HelpersProfile.cpp
alignlib_src/HelpersRegularizor.cpp
alignlib_src/HelpersRegularizor.h
alignlib_src/HelpersScorer.cpp
alignlib_src/HelpersScorer.h
alignlib_src/HelpersSequence.cpp
alignlib_src/HelpersSubstitutionMatrix.cpp
alignlib_src/HelpersSubstitutionMatrix.h
alignlib_src/HelpersTemplate.h
alignlib_src/HelpersToolkit.h
alignlib_src/HelpersTree.cpp
alignlib_src/HelpersTree.h
alignlib_src/HelpersTreetor.cpp
alignlib_src/HelpersTreetor.h
alignlib_src/HelpersWeightor.cpp
alignlib_src/HelpersWeightor.h
alignlib_src/ImplAlignandum.cpp
alignlib_src/ImplAlignandum.h
alignlib_src/ImplAlignator.cpp
alignlib_src/ImplAlignator.h
alignlib_src/ImplAlignatorDP.cpp
alignlib_src/ImplAlignatorDP.h
alignlib_src/ImplAlignatorDPFull.cpp
alignlib_src/ImplAlignatorDPFull.h
alignlib_src/ImplAlignatorDots.cpp
alignlib_src/ImplAlignatorDots.h
alignlib_src/ImplAlignatorDotsDiagonal.cpp
alignlib_src/ImplAlignatorDotsDiagonal.h
alignlib_src/ImplAlignatorDotsQuick.cpp
alignlib_src/ImplAlignatorDotsQuick.h
alignlib_src/ImplAlignatorDotsWrap.cpp
alignlib_src/ImplAlignatorDotsWrap.h
alignlib_src/ImplAlignatorFragments.cpp
alignlib_src/ImplAlignatorFragments.h
alignlib_src/ImplAlignatorGroupies.cpp
alignlib_src/ImplAlignatorGroupies.h
alignlib_src/ImplAlignatorIdentity.cpp
alignlib_src/ImplAlignatorIdentity.h
alignlib_src/ImplAlignatorIterative.cpp
alignlib_src/ImplAlignatorIterative.h
alignlib_src/ImplAlignatorPrebuilt.cpp
alignlib_src/ImplAlignatorPrebuilt.h
alignlib_src/ImplAlignatorSimilarity.cpp
alignlib_src/ImplAlignatorSimilarity.h
alignlib_src/ImplAlignatorTuples.cpp
alignlib_src/ImplAlignatorTuples.h
alignlib_src/ImplAlignatum.cpp
alignlib_src/ImplAlignatum.h
alignlib_src/ImplAlignlibBase.cpp
alignlib_src/ImplAlignlibBase.h
alignlib_src/ImplAlignment.cpp
alignlib_src/ImplAlignment.h
alignlib_src/ImplAlignmentBlocks.cpp
alignlib_src/ImplAlignmentBlocks.h
alignlib_src/ImplAlignmentMatrix.cpp
alignlib_src/ImplAlignmentMatrix.h
alignlib_src/ImplAlignmentMatrixDiagonal.cpp
alignlib_src/ImplAlignmentMatrixDiagonal.h
alignlib_src/ImplAlignmentMatrixRow.cpp
alignlib_src/ImplAlignmentMatrixRow.h
alignlib_src/ImplAlignmentMatrixUnsorted.cpp
alignlib_src/ImplAlignmentMatrixUnsorted.h
alignlib_src/ImplAlignmentSorted.cpp
alignlib_src/ImplAlignmentSorted.h
alignlib_src/ImplAlignmentVector.cpp
alignlib_src/ImplAlignmentVector.h
alignlib_src/ImplDistanceMatrix.cpp
alignlib_src/ImplDistanceMatrix.h
alignlib_src/ImplDistanceMatrixSymmetric.cpp
alignlib_src/ImplDistanceMatrixSymmetric.h
alignlib_src/ImplDistor.cpp
alignlib_src/ImplDistor.h
alignlib_src/ImplDistorClustal.cpp
alignlib_src/ImplDistorClustal.h
alignlib_src/ImplDistorDummy.cpp
alignlib_src/ImplDistorDummy.h
alignlib_src/ImplDistorKimura.cpp
alignlib_src/ImplDistorKimura.h
alignlib_src/ImplEncoder.cpp
alignlib_src/ImplEncoder.h
alignlib_src/ImplFragmentor.cpp
alignlib_src/ImplFragmentor.h
alignlib_src/ImplFragmentorDiagonals.cpp
alignlib_src/ImplFragmentorDiagonals.h
alignlib_src/ImplFragmentorIterative.cpp
alignlib_src/ImplFragmentorIterative.h
alignlib_src/ImplFragmentorRepetitive.cpp
alignlib_src/ImplFragmentorRepetitive.h
alignlib_src/ImplIterator2D.cpp
alignlib_src/ImplIterator2D.h
alignlib_src/ImplIterator2DBanded.cpp
alignlib_src/ImplIterator2DBanded.h
alignlib_src/ImplIterator2DFull.cpp
alignlib_src/ImplIterator2DFull.h
alignlib_src/ImplLogOddor.cpp
alignlib_src/ImplLogOddor.h
alignlib_src/ImplLogOddorBackground.cpp
alignlib_src/ImplLogOddorBackground.h
alignlib_src/ImplLogOddorDirichlet.cpp
alignlib_src/ImplLogOddorGribskov.cpp
alignlib_src/ImplLogOddorGribskov.h
alignlib_src/ImplLogOddorUniform.cpp
alignlib_src/ImplLogOddorUniform.h
alignlib_src/ImplMultAlignment.cpp
alignlib_src/ImplMultAlignment.h
alignlib_src/ImplMultipleAlignator.cpp
alignlib_src/ImplMultipleAlignator.h
alignlib_src/ImplMultipleAlignatorPileup.cpp
alignlib_src/ImplMultipleAlignatorPileup.h
alignlib_src/ImplMultipleAlignatorSimple.cpp
alignlib_src/ImplMultipleAlignatorSimple.h
alignlib_src/ImplMultipleAlignment.cpp
alignlib_src/ImplMultipleAlignment.h
alignlib_src/ImplMultipleAlignmentDots.cpp
alignlib_src/ImplMultipleAlignmentDots.h
alignlib_src/ImplNoRegularizor.h
alignlib_src/ImplProfile.cpp
alignlib_src/ImplProfile.h
alignlib_src/ImplRegularizor.cpp
alignlib_src/ImplRegularizor.h
alignlib_src/ImplRegularizorDirichlet.cpp
alignlib_src/ImplRegularizorDirichlet.h
alignlib_src/ImplRegularizorDirichletHash.cpp
alignlib_src/ImplRegularizorDirichletHash.h
alignlib_src/ImplRegularizorDirichletInterpolate.cpp
alignlib_src/ImplRegularizorDirichletInterpolate.h
alignlib_src/ImplRegularizorDirichletPrecomputed.cpp
alignlib_src/ImplRegularizorDirichletPrecomputed.h
alignlib_src/ImplRegularizorTatusov.cpp
alignlib_src/ImplRegularizorTatusov.h
alignlib_src/ImplScorer.cpp
alignlib_src/ImplScorer.h
alignlib_src/ImplScorerProfileProfile.cpp
alignlib_src/ImplScorerProfileProfile.h
alignlib_src/ImplScorerProfileSequence.cpp
alignlib_src/ImplScorerProfileSequence.h
alignlib_src/ImplScorerSequenceProfile.cpp
alignlib_src/ImplScorerSequenceProfile.h
alignlib_src/ImplScorerSequenceSequence.cpp
alignlib_src/ImplScorerSequenceSequence.h
alignlib_src/ImplSequence.cpp
alignlib_src/ImplSequence.h
alignlib_src/ImplToolkit.cpp
alignlib_src/ImplTree.cpp
alignlib_src/ImplTree.h
alignlib_src/ImplTreetor.cpp
alignlib_src/ImplTreetor.h
alignlib_src/ImplTreetorDistance.cpp
alignlib_src/ImplTreetorDistance.h
alignlib_src/ImplTreetorDistanceLinkage.cpp
alignlib_src/ImplTreetorDistanceLinkage.h
alignlib_src/ImplTreetorDistanceNJ.cpp
alignlib_src/ImplTreetorDistanceNJ.h
alignlib_src/ImplWeightor.cpp
alignlib_src/ImplWeightor.h
alignlib_src/ImplWeightorHenikoff.cpp
alignlib_src/ImplWeightorHenikoff.h
alignlib_src/Iterator2D.cpp
alignlib_src/Iterator2D.h
alignlib_src/LogOddor.cpp
alignlib_src/LogOddor.h
alignlib_src/Macros.h
alignlib_src/Matrix.h
alignlib_src/MultAlignment.cpp
alignlib_src/MultAlignment.h
alignlib_src/MultAlignmentFormat.cpp
alignlib_src/MultAlignmentFormat.h
alignlib_src/MultipleAlignator.cpp
alignlib_src/MultipleAlignator.h
alignlib_src/MultipleAlignment.cpp
alignlib_src/MultipleAlignment.h
alignlib_src/MultipleAlignmentFormat.cpp
alignlib_src/MultipleAlignmentFormat.h
alignlib_src/Profile.cpp
alignlib_src/Profile.h
alignlib_src/Regularizor.cpp
alignlib_src/Regularizor.h
alignlib_src/Scorer.cpp
alignlib_src/Scorer.h
alignlib_src/Segment.cpp
alignlib_src/Segment.h
alignlib_src/Sequence.cpp
alignlib_src/Sequence.h
alignlib_src/Statistics.cpp
alignlib_src/Statistics.h
alignlib_src/Toolkit.cpp
alignlib_src/Toolkit.h
alignlib_src/Tree.cpp
alignlib_src/Tree.h
alignlib_src/Treetor.cpp
alignlib_src/Treetor.h
alignlib_src/Weightor.cpp
alignlib_src/Weightor.h
alignlib_src/alignlib.h
alignlib_src/alignlib_cython.h
alignlib_src/alignlib_default.h
alignlib_src/alignlib_functions.h
alignlib_src/alignlib_fwd.h
alignlib_src/alignlib_interfaces.h
alignlib_src/alignlib_types.h