README.rst
advntr/__init__.py
advntr/__main__.py
advntr/acgt_filter.py
advntr/advntr_commands.py
advntr/blast_method_statistics.py
advntr/blast_parameters.py
advntr/blast_wrapper.py
advntr/compare_frameshift_identifications.py
advntr/compare_read_mapping_sensitivity.py
advntr/compare_read_recruitments.py
advntr/coverage_bias.py
advntr/distance.py
advntr/find_vntrs_with_different_repeats.py
advntr/genome_analyzer.py
advntr/hierarchical_clustering.py
advntr/hmm_utils.py
advntr/models.py
advntr/pacbio_haplotyper.py
advntr/plot.py
advntr/profile_hmm.py
advntr/profiler.py
advntr/reference_editor.py
advntr/reference_vntr.py
advntr/repeat_finder.py
advntr/sam_utils.py
advntr/settings.py
advntr/unit_tests.py
advntr/utils.py
advntr/vntr_annotation.py
advntr/vntr_finder.py
advntr/vntr_graph.py
advntr.egg-info/PKG-INFO
advntr.egg-info/SOURCES.txt
advntr.egg-info/dependency_links.txt
advntr.egg-info/entry_points.txt
advntr.egg-info/requires.txt
advntr.egg-info/top_level.txt
pomegranate/__init__.py
pomegranate/base.c
pomegranate/distributions.c
pomegranate/hmm.c
pomegranate/utils.c