# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Nov 10 22:10:35 2021
# ------------------------------------------------

package:
  name: abyss
  version: 2.3.3
source:
  sha256: 4b14642989e84f331d8d1a854cca67bdede95e90bd6813836c173a951d71405c
  url: https://github.com/bcgsc/abyss/releases/download/2.3.3/abyss-2.3.3.tar.gz
build:
  number: '0'
  string: hd403d74_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_1
    - gcc_impl_linux-64 9.4.0 h03d3576_11
    - gcc_linux-64 9.4.0 h391b98a_1
    - gxx_impl_linux-64 9.4.0 h03d3576_11
    - gxx_linux-64 9.4.0 h0316aca_1
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 9.4.0 hd854feb_11
    - libgcc-ng 11.2.0 h1d223b6_11
    - libgomp 11.2.0 h1d223b6_11
    - libsanitizer 9.4.0 h79bfe98_11
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_11
    - libstdcxx-ng 11.2.0 he4da1e4_11
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - boost-cpp 1.74.0 h359cf19_5
    - bzip2 1.0.8 h7f98852_4
    - icu 69.1 h9c3ff4c_0
    - libgcc-ng 11.2.0 h1d223b6_11
    - libgfortran-ng 11.2.0 h69a702a_11
    - libgfortran5 11.2.0 h5c6108e_11
    - libgomp 11.2.0 h1d223b6_11
    - libstdcxx-ng 11.2.0 he4da1e4_11
    - libzlib 1.2.11 h36c2ea0_1013
    - lz4-c 1.9.3 h9c3ff4c_1
    - mpi 1.0 openmpi
    - openmpi 4.1.1 hbfc84c5_0
    - sparsehash 2.0.4 h9c3ff4c_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.0 ha95c52a_0
  run:
    - libgcc-ng >=9.4.0
    - libstdcxx-ng >=9.4.0
    - make
    - openmpi >=4.1.1,<5.0a0
    - util-linux
test:
  commands:
    - ABYSS-P --version | grep -q "2.3.3"
    - ABYSS --version | grep -q "2.3.3"
    - abyss-pe help | grep -q "Assemble reads into contigs and scaffolds"
about:
  dev_url: https://github.com/bcgsc/abyss
  doc_url: https://github.com/bcgsc/abyss#readme
  home: http://www.bcgsc.ca/platform/bioinfo/software/abyss
  license: GPL3
  license_file: LICENSE
  summary: Assembly By Short Sequences - a de novo, parallel, paired-end sequence
    assembler
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:abyss
    - doi:10.1101/gr.089532.108
    - doi:10.1101/gr.214346.116
