
mkdir -p src
cat ../{card,argannot,ncbibetalactamase,resfinder}/sequences > src/amr.fa
cd-hit-est -i src/amr.fa -o src/cdhit -c 1.00 -g 1 -T 4 -d 100
cp -fv src/cdhit sequences
makeblastdb -in sequences -title abricate -taxid 2 -dbtype nucl -parse_seqids -hash_index -logfile src/makeblastdb.log

